Package: CausalGPS 0.5.0

Naeem Khoshnevis

CausalGPS: Matching on Generalized Propensity Scores with Continuous Exposures

Provides a framework for estimating causal effects of a continuous exposure using observational data, and implementing matching and weighting on the generalized propensity score. Wu, X., Mealli, F., Kioumourtzoglou, M.A., Dominici, F. and Braun, D., 2022. Matching on generalized propensity scores with continuous exposures. Journal of the American Statistical Association, pp.1-29.

Authors:Naeem Khoshnevis [aut, cre], Xiao Wu [aut], Danielle Braun [aut]

CausalGPS_0.5.0.tar.gz
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CausalGPS.pdf |CausalGPS.html✨
CausalGPS/json (API)
NEWS

# Install 'CausalGPS' in R:

install.packages('CausalGPS', repos = c('https://nsaph-software.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/nsaph-software/causalgps/issues

Uses libs:

c++– GNU Standard C++ Library v3
openmp– GCC OpenMP (GOMP) support library

Datasets:

synthetic_us_2010 - Public data set for air pollution and health studies, case study: 2010 county-Level data set for the contiguous United States

On CRAN:

12 exports 24 stars 2.52 score 106 dependencies 37 scripts 548 downloads

Last updated 3 months agofrom:293449c9ec. Checks:OK: 1 WARNING: 8. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 17 2024
R-4.5-win-x86_64	WARNING	Sep 17 2024
R-4.5-linux-x86_64	WARNING	Sep 17 2024
R-4.4-win-x86_64	WARNING	Sep 17 2024
R-4.4-mac-x86_64	WARNING	Sep 17 2024
R-4.4-mac-aarch64	WARNING	Sep 17 2024
R-4.3-win-x86_64	WARNING	Sep 17 2024
R-4.3-mac-x86_64	WARNING	Sep 17 2024
R-4.3-mac-aarch64	WARNING	Sep 17 2024

Exports:absolute_corr_fun absolute_weighted_corr_fun check_covar_balance compile_pseudo_pop compute_counter_weight estimate_erf estimate_gps generate_pseudo_pop generate_syn_data get_logger set_logger trim_it

Dependencies:admisc bitops caret caTools class cli clock codetools colorspace cowplot cpp11 cvAUC data.table diagram digest dplyr e1071 Ecume fansi farver foreach future future.apply gam generics ggplot2 globals glue gnm gower gplots gtable gtools hardhat ipred isoband iterators jsonlite kernlab KernSmooth labeling lattice lava lifecycle listenv locpol logger lubridate magrittr MASS Matrix mgcv minqa mnormt ModelMetrics munsell mvtnorm nlme nnet nnls numDeriv parallelly pbapply pillar pkgconfig plyr polycor pROC prodlim progressr proxy purrr qvcalc R6 RColorBrewer Rcpp RcppArmadillo RcppEigen recipes relimp reshape2 rlang ROCR rpart scales shape spatstat.univar spatstat.utils SQUAREM stringi stringr SuperLearner survival tibble tidyr tidyselect timechange timeDate transport tzdb utf8 vctrs viridisLite wCorr withr xgboost

CausalGPS

Rendered fromCausalGPS.Rmdusingknitr::rmarkdownon Sep 17 2024.

Last update: 2024-06-19
Started: 2021-05-12

Developers Guide

Rendered fromDevelopers-Guide.Rmdusingknitr::rmarkdownon Sep 17 2024.

Last update: 2023-09-30
Started: 2021-09-07

Estimating GPS

Rendered fromEstimating-GPS.Rmdusingknitr::rmarkdownon Sep 17 2024.

Last update: 2022-06-23
Started: 2021-09-07

Frequently Asked Questions

Rendered fromFrequently-Asked-Questions.Rmdusingknitr::rmarkdownon Sep 17 2024.

Last update: 2023-05-24
Started: 2022-12-16

Generate Synthetic Data

Rendered fromGenerating-Synthetic-Data.Rmdusingknitr::rmarkdownon Sep 17 2024.

Last update: 2021-09-07
Started: 2021-09-07

Generating Pseudo Population

Rendered fromGenerating-Pseudo-Population.Rmdusingknitr::rmarkdownon Sep 17 2024.

Last update: 2023-09-30
Started: 2021-09-07

Notes on SL Wrappers

Rendered fromNotes-on-SL-Wrapper.Rmdusingknitr::rmarkdownon Sep 17 2024.

Last update: 2022-06-23
Started: 2022-06-23

Outcome Models

Rendered fromOutcome-Models.Rmdusingknitr::rmarkdownon Sep 17 2024.

Last update: 2021-09-07
Started: 2021-09-07

Singularity

Rendered fromSingularity-Image.Rmdusingknitr::rmarkdownon Sep 17 2024.

Last update: 2022-12-16
Started: 2022-02-07

Testing the Package

Rendered fromTesting-the-Package.Rmdusingknitr::rmarkdownon Sep 17 2024.

Last update: 2023-04-24
Started: 2021-09-07

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
The 'CausalGPS' package.	CausalGPS-package CausalGPS
Check covariate balance using absolute approach	absolute_corr_fun
Check Weighted Covariate Balance Using Absolute Approach	absolute_weighted_corr_fun
Check covariate balance	check_covar_balance
Compile pseudo population	compile_pseudo_pop
Compute counter or weight of data samples	compute_counter_weight
Estimate Exposure Response Function	estimate_erf
Estimate generalized propensity score (GPS) values	estimate_gps
Generate pseudo population	generate_pseudo_pop
Generate synthetic data for the CausalGPS package	generate_syn_data
Get Logger Settings	get_logger
Extend generic plot functions for cgps_cw class	plot.cgps_cw
Extend generic plot functions for cgps_cw class	plot.cgps_erf
Extend generic plot functions for cgps_gps class	plot.cgps_gps
Extend generic plot functions for cgps_pspop class	plot.cgps_pspop
Extend generic plot functions for gpsm_erf class	plot.gpsm_erf
Extend generic plot functions for gpsm_erf class	plot.gpsm_pspop
Extend print function for cgps_cw object	print.cgps_cw
Extend print function for cgps_erf object	print.cgps_erf
Extend print function for cgps_gps object	print.cgps_gps
Extend print function for cgps_pspop object	print.cgps_pspop
Extend print function for gpsm_erf object	print.gpsm_erf
Extend print function for gpsm_pspop object	print.gpsm_pspop
Set Logger Settings	set_logger
print summary of cgps_cw object	summary.cgps_cw
print summary of cgps_erf object	summary.cgps_erf
print summary of cgps_gps object	summary.cgps_gps
print summary of cgps_pspop object	summary.cgps_pspop
print summary of gpsm_erf object	summary.gpsm_erf
print summary of gpsm_pspop object	summary.gpsm_pspop
Public data set for air pollution and health studies, case study: 2010 county-Level data set for the contiguous United States	synthetic_us_2010
Trim a data frame or an S3 object	trim_it